The major improvements and changes from the C2 datasets are detailed in Section 2 of Rossow et al (1999; BAMS, 80:2261-2287). The D2 datasets result from a complete reprocessing of the satellite data using improved algorithms. In addition, more variables are available for analysis.
While many variables are improved from the C2 archive some variables contained within the D2 files may still have problems. Two examples: the variable "CA_High" (Mean high cloud amount) exhibits a trend that may not be real. Specifically, global averages of "CA_High" indicates a decreasing trend from relatively stable 13-14% for 1983-1991 to about 11-12% in the late 90s. Global averages of the variable "PS_TOVS" (TOVS: Mean Surface pressure) exhibits distinct discontinuities in the global average which occur in 1987 and 1998.
Satellite information and "events" that may affect processing may be found at: http://isccp.giss.nasa.gov/docs/docSoftware.html (see: Satellite History Information).
Numerous links which describe the ISCCP Project:http://isccp.giss.nasa.gov/overview.html